Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9DBR1 | Xrn2 | 5'-3' exoribonuclease 2 (EC 3.1.13.-) … | Mus musculus (Mouse) | 951 aa |
Protein Details: Q9DBR1 (Xrn2)
Protein Information
| Accession | Q9DBR1 |
|---|---|
| Protein Names | 5'-3' exoribonuclease 2 (EC 3.1.13.-) (Protein Dhm1) |
| Gene Symbol | Xrn2 |
| Organism | Mus musculus (Mouse) |
| Length | 951 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35477839 37925639 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGVPAFFRWL11SRKYPSIIVN21CVEEKPKECN31GVKIPVDASK41PNPNDVEFDN
51-10051LYLDMNGIIH61PCTHPEDKPA71PKNEDEMMVA81IFEYIDRLFN91IVRPRRLLYM
101-150101AIDGVAPRAK111MNQQRSRRFR121ASKEGMEAAV131EKQRVREEIL141AKGGFLPPEE
151-200151IKERFDSNCI161TPGTEFMDNL171AKCLRYYIAD181RLNNDPGWKN191LTVILSDASA
201-250201PGEGEHKIMD211YIRRQRAQPN221HDPNTHHCLC231GADADLIMLG241LATHEPNFTI
251-300251IREEFKPNKP261KPCALCNQFG271HEVKDCEGLP281REKKGKHDEL291ADSLPCAEGE
301-350301FIFLRLNVLR311EYLERELTMA321SLPFPFDVER331SIDDWVFMCF341FVGNDFLPHL
351-400351PSLEIREGAI361DRLVNIYKNV371VHKTGGYLTE381SGYVNLQRVQ391MIMLAVGEVE
401-450401DSIFKKRKDD411EDSFRRRQKE421KRKRMKRDQP431AFTPSGILTP441HALGSRNSPG
451-500451CQVASNPRQA461AYEMRMQRNS471SPSISPNTSF481ASDGSPSPLG491GIKRKAEDSD
501-550501SEPEPEDNVR511LWEAGWKQRY521YKNKFDVDAA531DEKFRRKVVQ541SYVEGLCWVL
551-600551RYYYQGCASW561KWYYPFHYAP571FASDFEGIAD581MSSEFEKGTK591PFKPLEQLMG
601-650601VFPAASGNFL611PPTWRKLMSD621PDSSIIDFYP631EDFAIDLNGK641KYAWQGVALL
651-700651PFVDERRLRA661ALEEVYPDLT671PEENRRNSLG681GDVLFVGKLH691PLRDFILELY
701-750701QTGSTEPVDV711PPELCHGIQG721TFSLDEEAIL731PDQTVCSPVP741MLRDLTQNTA
751-800751VSINFKDPQF761AEDYVFKAAM771LPGARKPATV781LKPGDWEKSS791NGRQWKPQLG
801-850801FNRDRRPVHL811DQAAFRTLGH821VTPRGSGTSV831YTNTALPPAN841YQGNNYRPLL
851-900851RGQAQIPKLM861SNMRPQDSWR871GPPPLFQQHR881FERSVGAEPL891LPWNRMIQNQ
901-950901NAAFQPNQYQ911MLGGPGGYPP921RRDDHRGGRQ931GYPREGRKYP941LPPPSGRYSW
951-951951N
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 21 | Xrn1, N-terminal | - | - |
Deep-Palm: 0.54
|
|
| 29 | Xrn1, N-terminal 5'-3' exoribonuclease | - | - |
Deep-Palm: 0.19
|
|
| 62 | - | - | - |
Deep-Palm: 0.05
|
|
| 159 | - | - | - |
Deep-Palm: 0.62
|
|
| 173 | - | - | - |
Deep-Palm: 0.21
|
|
| 228 | - | - | - |
Deep-Palm: 0.14
|
|
| 230 | - | - | - |
Deep-Palm: 0.11
|
|
| 263 | - | - | - |
Deep-Palm: 0.12
|
|
| 266 | - | - | - |
Deep-Palm: 0.31
|
|
| 276 | - | - | - |
Deep-Palm: 0.38
|
|
| 296 | - | - | - |
Deep-Palm: 0.89
|
|
| 339 | - | - | - |
Deep-Palm: 0.12
|
|
| 451 | - | - | - |
Deep-Palm: 0.85
|
|
| 547 | - | - | - |
Deep-Palm: 0.24
|
|
| 557 | - | - | - |
Deep-Palm: 0.05
|
|
| 715 | - | - | - |
Deep-Palm: 0.82
|
|
| 736 | - | - | - |
Deep-Palm: 0.92
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
3
Liver
Specificity: 0.600
3/3 (100.0%)
2
Testis
Specificity: 0.400
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.