Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9EPU0 | Upf1 | Regulator of nonsense transcripts 1 … | Mus musculus (Mouse) | 1124 aa |
Protein Details: Q9EPU0 (Upf1)
Protein Information
| Accession | Q9EPU0 |
|---|---|
| Protein Names | Regulator of nonsense transcripts 1 (EC 3.6.4.12) (EC 3.6.4.13) (ATP-dependent helicase RENT1) (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog) (mUpf1) |
| Gene Symbol | Upf1 |
| Organism | Mus musculus (Mouse) |
| Length | 1124 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 34884899 35477839 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSVEAYGPSS11QTLTFLDTEE21AELLGADTQG31SEFEFTDFTL41PSQTQTPPGG
51-10051PGGAGGPGGA61GAGGAAGQLD71AQVGPEGILQ81NGAVDDSVAK91TSQLLAELNF
101-150101EEDEEDTYYT111KDLPVHACSY121CGIHDPACVV131YCNTSKKWFC141NGRGNTSGSH
151-200151IVNHLVRAKC161KEVTLHKDGP171LGETVLECYN181CGCRNVFLLG191FIPAKADSVV
201-250201VLLCRQPCAS211QSSLKDINWD221SSQWQPLIQD231RCFLSWLVKI241PSEQEQLRAR
251-300251QITAQQINKL261EELWKENPSA271TLEDLEKPGV281DEEPQHVLLR291YEDAYQYQNI
301-350301FGPLVKLEAD311YDKKLKESQT321QDNITVRWDL331GLNKKRIAFF341TLPKTDSGNE
351-400351DLVIIWLRDM361RLMQGDEICL371RYKGDLAPLW381KGIGHVIKVP391DNYGDEIAIE
401-450401LRSSVGAPVE411VTHNFQVDFV421WKSTSFDRMQ431SALKTFAVDE441TSVSGYIYHK
451-500451LLGHEVEDVV461IKCQLPKRFT471AQGLPDLNHS481QVYAVKTVLQ491RPLSLIQGPP
501-550501GTGKTVTSAT511IVYHLARQGN521GPVLVCAPSN531IAVDQLTEKI541HQTGLKVVRL
551-600551CAKSREAIDS561PVSFLALHNQ571IRNMDSMPEL581QKLQQLKDET591GELSSADEKR
601-650601YRALKRTAER611ELLMNADVIC621CTCVGAGDPR631LAKMQFRSIL641IDESTQATEP
651-700651ECMVPVVLGA661KQLILVGDHC671QLGPVVMCKK681AAKAGLSQSL691FERLVVLGIR
701-750701PIRLQVQYRM711HPALSAFPSN721IFYEGSLQNG731VTAADRVKKG741FDFQWPQPDK
751-800751PMFFYVTQGQ761EEIASSGTSY771LNRTEAANVE781KITTKLLKAG791AKPDQIGIIT
801-850801PYEGQRSYLV811QYMQFSGSLH821TKLYQEVEIA831SVDAFQGREK841DFIILSCVRA
851-900851NEHQGIGFLN861DPRRLNVALT871RARYGVIIVG881NPKALSKQPL891WNHLLSYYKE
901-950901QKALVEGPLN911NLRESLMQFS921KPRKLVNTVN931PGARFMTTAM941YDAREAIIPG
951-1000951SVYDRSSQGR961PSNMYFQTHD971QISMISAGPS981HVAAMNIPIP991FNLVMPPMPP
1001-10501001PGYFGQANGP1011AAGRGTPKTK1021TGRGGRQKNR1031FGLPGPSQTT1041LPNSQASQDV
1051-11001051ASQPFSQGAL1061TQGYVSMSQP1071SQMSQPGLSQ1081PELSQDSYLG1091DEFKSQIDVA
1101-11241101LSQDSTYQGE1111RAYQHGGVTG1121LSQY
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 118 | - | - | - |
Deep-Palm: 0.03
|
|
| 121 | - | - | - |
Deep-Palm: 0.04
|
|
| 128 | - | - | - |
Deep-Palm: 0.02
|
|
| 132 | - | - | - |
Deep-Palm: 0.02
|
|
| 140 | - | - | - |
Deep-Palm: 0.03
|
|
| 160 | - | - | - |
Deep-Palm: 0.86
|
|
| 178 | - | - | - |
Deep-Palm: 0.32
|
|
| 181 | - | - | - |
Deep-Palm: 0.49
|
|
| 183 | - | - | - |
Deep-Palm: 0.38
|
|
| 204 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.92
|
|
| 208 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.90
|
|
| 232 | - | - | - |
Deep-Palm: 0.48
|
|
| 369 | SWISSPALM DBPTM CYSMODDB | RNA helicase UPF1 1B domain |
Liver
(28526873)
| - |
GPS-Palm: 0.93
Deep-Palm: 0.92
|
| 463 | - | - | - |
Deep-Palm: 0.92
|
|
| 526 | - | - | - |
Deep-Palm: 0.86
|
|
| 551 | - | - | - |
Deep-Palm: 0.97
|
|
| 620 | - | - | - |
Deep-Palm: 0.88
|
|
| 621 | - | - | - |
Deep-Palm: 0.87
|
|
| 623 | - | - | - |
Deep-Palm: 0.86
|
|
| 652 | - | - | - |
Deep-Palm: 0.89
|
|
| 670 | - | - | - |
Deep-Palm: 0.96
|
|
| 678 | - | - | - |
Deep-Palm: 0.97
|
|
| 847 | - | - | - |
Deep-Palm: 0.86
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
6
Liver
Specificity: 0.667
6/6 (100.0%)
2
Testis
Specificity: 0.222
2/2 (100.0%)
1
Brain
Specificity: 0.111
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.