Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9ERD7 | Tubb3 | Tubulin beta-3 chain | Mus musculus (Mouse) | 450 aa |
Protein Details: Q9ERD7 (Tubb3)
Protein Information
| Accession | Q9ERD7 |
|---|---|
| Protein Names | Tubulin beta-3 chain |
| Gene Symbol | Tubb3 |
| Organism | Mus musculus (Mouse) |
| Length | 450 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29660268 29733200 34200797 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MREIVHIQAG11QCGNQIGAKF21WEVISDEHGI31DPSGNYVGDS41DLQLERISVY
51-10051YNEASSHKYV61PRAILVDLEP71GTMDSVRSGA81FGHLFRPDNF91IFGQSGAGNN
101-150101WAKGHYTEGA111ELVDSVLDVV121RKECENCDCL131QGFQLTHSLG141GGTGSGMGTL
151-200151LISKVREEYP161DRIMNTFSVV171PSPKVSDTVV181EPYNATLSIH191QLVENTDETY
201-250201CIDNEALYDI211CFRTLKLATP221TYGDLNHLVS231ATMSGVTTSL241RFPGQLNADL
251-300251RKLAVNMVPF261PRLHFFMPGF271APLTARGSQQ281YRALTVPELT291QQMFDAKNMM
301-350301AACDPRHGRY311LTVATVFRGR321MSMKEVDEQM331LAIQSKNSSY341FVEWIPNNVK
351-400351VAVCDIPPRG361LKMSSTFIGN371STAIQELFKR381ISEQFTAMFR391RKAFLHWYTG
401-450401EGMDEMEFTE411AESNMNDLVS421EYQQYQDATA431EEEGEMYEDD441DEESEAQGPK
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 12 | Tubulin/FtsZ, GTPase domain OS01G0282866 PROTEIN Tubulin/FtsZ, GTPase domain superfamily |
brain
(39008777)
| - |
Deep-Palm: 0.03
|
|
| 124 | SWISSPALM DBPTM CYSMODDB | Tubulin/FtsZ family GTPase domain |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.67
|
| 127 | SWISSPALM DBPTM CYSMODDB | Tubulin/FtsZ family GTPase domain |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.69
|
| 129 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.79
|
|
| 201 | - | - | - |
Deep-Palm: 0.11
|
|
| 211 | - | - | - |
Deep-Palm: 0.20
|
|
| 303 | Tubulin C-terminal domain |
Brain
(34200797)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.94
Deep-Palm: 0.60
|
|
| 354 | Tubulin C-terminal domain |
brain
(39008777)
|
Brain
(35358180)
|
GPS-Palm: 0.92
Deep-Palm: 0.65
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.625
5
Brain
Specificity: 0.109
5/5 (100.0%)
2
Testis
Specificity: 0.043
2/2 (100.0%)
1
Liver
Specificity: 0.022
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
38
Brain tissue (Mass)
Specificity: 0.826
38/56 (67.9%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.