Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9ERG0 | Lima1 | LIM domain and actin-binding protein … | Mus musculus (Mouse) | 753 aa |
Protein Details: Q9ERG0 (Lima1)
Protein Information
| Accession | Q9ERG0 |
|---|---|
| Protein Names | LIM domain and actin-binding protein 1 (Epithelial protein lost in neoplasm) (mEPLIN) |
| Gene Symbol | Lima1 |
| Organism | Mus musculus (Mouse) |
| Length | 753 aa |
| Isoforms | No isoforms |
| Related PMIDs | 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MESTPFNRRQ11WTSLSLRVTA21KELSLVNKNK31SSAIVEIFSK41YQKAAEEANM
51-10051ERKKNNPESL61PQHFRRGTLS71VLKKKWENPV81AGAEFHTDSL91PNSSSEGGHT
101-150101ADYPPAEVTD111KPAPGVRADR121EEHTQPKPRF131GSRPEAVIQS141RYPRSENSHD
151-200151FKAQATESQK161MENCLGDSRH171EAEKPETSEN181TETSGKIEKY191NVPLNRLKMM
201-250201FEKGEHNQTK211SLWTQSRNAG221GRRLSENNCS231LDDWEIGAGH241LSSSAFNSEK
251-300251NESKRNLELP261RLSETSIKDR271MAKYQAAVSK281QSSPASYTNE291LKTSESKTHK
301-350301WEQKENVPPG311PEACSVHQEG321SKVSTTENSL331VALSVPAEDD341TCNSQVKSEA
351-400351QQPMHPKPLS361PDARTSSLPE371SSPSKTAKKF381QAPAKESCVE391CQKTVYPMER
401-450401LLANQQVFHI411SCFRCSYCNN421KLSLGTYASL431HGRIYCKPHF441NQLFKSKGNY
451-500451DEGFGHKQHK461DLWASKSDNE471ETLGRPAQPP481NAGESPHSPG491VEDAPIAKVG
501-550501VLAASMEAKA511SSQREREDKP521AETKKLRIAW531PPPAELGGSG541SALEEGIKVS
551-600551KPKWPPEDDV561CKTEAPEDVD571LDLKKLRRSS581SLKERSRPFT591VAASFRTSSI
601-650601KSPKASSPSL611RKGWSESEQS621EEFGGGIATM631ERKQTENARP641SGEKENVGKS
651-700651RWQGEEVPRS661KDRSSFELES671ENFMENGANI681AEDDNHVHAQ691QSPLEPEAPG
701-750701WSGFVDTTAA711KEFTTQNQKS721QDVGFWEGEV731VRELSVEEQI741KRNRYYDEDE
751-753751DEE
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 164 | - | - | - |
Deep-Palm: 0.77
|
|
| 229 | - | - | - |
Deep-Palm: 0.90
|
|
| 314 | - | - | - |
Deep-Palm: 0.55
|
|
| 342 | - | - | - |
Deep-Palm: 0.73
|
|
| 388 | - | - | - |
Deep-Palm: 0.68
|
|
| 391 | - | - | - |
Deep-Palm: 0.47
|
|
| 412 | SWISSPALM DBPTM CYSMODDB | LIM domain |
liver
(26165157)
| - |
Deep-Palm: 0.49
|
| 415 | - | - | - |
Deep-Palm: 0.23
|
|
| 418 | - | - | - |
Deep-Palm: 0.10
|
|
| 436 | - | - | - |
Deep-Palm: 0.86
|
|
| 561 | - | - | - |
Deep-Palm: 0.92
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
Liver
Specificity: 1.000
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.