Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9GZU7-2 | CTDSP1 | Carboxy-terminal domain RNA polymerase II … | Homo sapiens (Human) | 260 aa |
Protein Details: Q9GZU7-2 (CTDSP1)
Protein Information
| Accession | Q9GZU7-2 |
|---|---|
| Protein Names | Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-IF) (NLI-interacting factor 3) (Small C-terminal domain phosphatase 1) (SCP1) (Small CTD phosphatase 1) |
| Gene Symbol | CTDSP1 |
| Organism | Homo sapiens (Human) |
| Length | 260 aa |
| Isoforms | |
| Related PMIDs | 26111759 31251020 32651440 33636221 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDSSAVITQI11SKEEARGPLR21GKGDQKSAAS31QKPRSRGILH41SLFCCVCRDD
51-10051GEALPAHSGA61PLLVEENGAI71PKTPVQYLLP81EAKAQDSDKI91CVVIDLDETL
101-150101VHSSFKPVNN111ADFIIPVEID121GVVHQVYVLK131RPHVDEFLQR141MGELFECVLF
151-200151TASLAKYADP161VADLLDKWGA171FRARLFRESC181VFHRGNYVKD191LSRLGRDLRR
201-250201VLILDNSPAS211YVFHPDNAVP221VASWFDNMSD231TELHDLLPFF241EQLSRVDDVY
251-260251SVLRQPRPGS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 44 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.96
|
|
| 45 | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.95
|
|
| 47 | - | - | - |
Deep-Palm: 0.95
|
|
| 92 | - | - | - |
Deep-Palm: 0.90
|
|
| 147 | - | - | - |
GPS-Palm: 0.91
|
|
| 148 | - | - | - |
Deep-Palm: 0.72
|
|
| 181 | - | - | - |
Deep-Palm: 0.97
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.400
6
Jurkat T cell
Specificity: 0.400
6/6 (100.0%)
4
LNCaP
Specificity: 0.267
4/4 (100.0%)
4
Primary T cell
Specificity: 0.267
4/4 (100.0%)
1
heart
Specificity: 0.067
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 181 | C → S | 0.003559 | SNP | Missense Mutation | KIRP |
| 246 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |