Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9HCM2 | PLXNA4 | Plexin-A4 | Homo sapiens (Human) | 1894 aa |
Protein Details: Q9HCM2 (PLXNA4)
Protein Information
| Accession | Q9HCM2 |
|---|---|
| Protein Names | Plexin-A4 |
| Gene Symbol | PLXNA4 |
| Organism | Homo sapiens (Human) |
| Length | 1894 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MKAMPWNWTC11LLSHLLMVGM21GSSTLLTRQP31APLSQKQRSF41VTFRGEPAEG
51-10051FNHLVVDERT61GHIYLGAVNR71IYKLSSDLKV81LVTHETGPDE91DNPKCYPPRI
101-150101VQTCNEPLTT111TNNVNKMLLI121DYKENRLIAC131GSLYQGICKL141LRLEDLFKLG
151-200151EPYHKKEHYL161SGVNESGSVF171GVIVSYSNLD181DKLFIATAVD191GKPEYFPTIS
201-250201SRKLTKNSEA211DGMFAYVFHD221EFVASMIKIP231SDTFTIIPDF241DIYYVYGFSS
251-300251GNFVYFLTLQ261PEMVSPPGST271TKEQVYTSKL281VRLCKEDTAF291NSYVEVPIGC
301-350301ERSGVEYRLL311QAAYLSKAGA321VLGRTLGVHP331DDDLLFTVFS341KGQKRKMKSL
351-400351DESALCIFIL361KQINDRIKER371LQSCYRGEGT381LDLAWLKVKD391IPCSSALLTI
401-450401DDNFCGLDMN411APLGVSDMVR421GIPVFTEDRD431RMTSVIAYVY441KNHSLAFVGT
451-500451KSGKLKKIRV461DGPRGNALQY471ETVQVVDPGP481VLRDMAFSKD491HEQLYIMSER
501-550501QLTRVPVESC511GQYQSCGECL521GSGDPHCGWC531VLHNTCTRKE541RCERSKEPRR
551-600551FASEMKQCVR561LTVHPNNISV571SQYNVLLVLE581TYNVPELSAG591VNCTFEDLSE
601-650601MDGLVVGNQI611QCYSPAAKEV621PRIITENGDH631HVVQLQLKSK641ETGMTFASTS
651-700651FVFYNCSVHN661SCLSCVESPY671RCHWCKYRHV681CTHDPKTCSF691QEGRVKLPED
701-750701CPQLLRVDKI711LVPVEVIKPI721TLKAKNLPQP731QSGQRGYECI741LNIQGSEQRV
751-800751PALRFNSSSV761QCQNTSYSYE771GMEINNLPVE781LTVVWNGHFN791IDNPAQNKVH
801-850801LYKCGAMRES811CGLCLKADPD821FACGWCQGPG831QCTLRQHCPA841QESQWLELSG
851-900851AKSKCTNPRI861TEIIPVTGPR871EGGTKVTIRG881ENLGLEFRDI891ASHVKVAGVE
901-950901CSPLVDGYIP911AEQIVCEMGE921AKPSQHAGFV931EICVAVCRPE941FMARSSQLYY
951-1000951FMTLTLSDLK961PSRGPMSGGT971QVTITGTNLN981AGSNVVVMFG991KQPCLFHRRS
1001-10501001PSYIVCNTTS1011SDEVLEMKVS1021VQVDRAKIHQ1031DLVFQYVEDP1041TIVRIEPEWS
1051-11001051IVSGNTPIAV1061WGTHLDLIQN1071PQIRAKHGGK1081EHINICEVLN1091ATEMTCQAPA
1101-11501101LALGPDHQSD1111LTERPEEFGF1121ILDNVQSLLI1131LNKTNFTYYP1141NPVFEAFGPS
1151-12001151GILELKPGTP1161IILKGKNLIP1171PVAGGNVKLN1181YTVLVGEKPC1191TVTVSDVQLL
1201-12501201CESPNLIGRH1211KVMARVGGME1221YSPGMVYIAP1231DSPLSLPAIV1241SIAVAGGLLI
1251-13001251IFIVAVLIAY1261KRKSRESDLT1271LKRLQMQMDN1281LESRVALECK1291EAFAELQTDI
1301-13501301HELTSDLDGA1311GIPFLDYRTY1321TMRVLFPGIE1331DHPVLRDLEV1341PGYRQERVEK
1351-14001351GLKLFAQLIN1361NKVFLLSFIR1371TLESQRSFSM1381RDRGNVASLI1391MTVLQSKLEY
1401-14501401ATDVLKQLLA1411DLIDKNLESK1421NHPKLLLRRT1431ESVAEKMLTN1441WFTFLLYKFL
1451-15001451KECAGEPLFS1461LFCAIKQQME1471KGPIDAITGE1481ARYSLSEDKL1491IRQQIDYKTL
1501-15501501VLSCVSPDNA1511NSPEVPVKIL1521NCDTITQVKE1531KILDAIFKNV1541PCSHRPKAAD
1551-16001551MDLEWRQGSG1561ARMILQDEDI1571TTKIENDWKR1581LNTLAHYQVP1591DGSVVALVSK
1601-16501601QVTAYNAVNN1611STVSRTSASK1621YENMIRYTGS1631PDSLRSRTPM1641ITPDLESGVK
1651-17001651MWHLVKNHEH1661GDQKEGDRGS1671KMVSEIYLTR1681LLATKGTLQK1691FVDDLFETIF
1701-17501701STAHRGSALP1711LAIKYMFDFL1721DEQADKHGIH1731DPHVRHTWKS1741NCLPLRFWVN
1751-18001751MIKNPQFVFD1761IHKNSITDAC1771LSVVAQTFMD1781SCSTSEHRLG1791KDSPSNKLLY
1801-18501801AKDIPSYKNW1811VERYYSDIGK1821MPAISDQDMN1831AYLAEQSRMH1841MNEFNTMSAL
1851-18941851SEIFSYVGKY1861SEEILGPLDH1871DDQCGKQKLA1881YKLEQVITLM1891SLDS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 10 | - | - | - |
Deep-Palm: 0.03
|
|
| 95 | - | - | - |
Deep-Palm: 0.20
|
|
| 104 | - | - | - |
Deep-Palm: 0.09
|
|
| 130 | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.78
Deep-Palm: 0.90
|
|
| 138 | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.79
Deep-Palm: 0.92
|
|
| 284 | - | - | - |
GPS-Palm: 0.67
Deep-Palm: 0.91
|
|
| 300 | - | - | - |
GPS-Palm: 0.66
Deep-Palm: 0.95
|
|
| 356 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.95
|
|
| 374 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.97
|
|
| 393 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.93
|
|
| 405 | - | - | - |
Deep-Palm: 0.49
|
|
| 510 | - | - | - |
Deep-Palm: 0.43
|
|
| 516 | - | - | - |
Deep-Palm: 0.05
|
|
| 519 | - | - | - |
Deep-Palm: 0.04
|
|
| 527 | - | - | - |
Deep-Palm: 0.06
|
|
| 530 | - | - | - |
Deep-Palm: 0.12
|
|
| 536 | - | - | - |
Deep-Palm: 0.11
|
|
| 542 | - | - | - |
Deep-Palm: 0.24
|
|
| 558 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.77
|
|
| 593 | - | - | - |
Deep-Palm: 0.78
|
|
| 612 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.84
|
|
| 656 | - | - | - |
Deep-Palm: 0.03
|
|
| 662 | - | - | - |
Deep-Palm: 0.01
|
|
| 665 | - | - | - |
Deep-Palm: 0.01
|
|
| 672 | - | - | - |
Deep-Palm: 0.02
|
|
| 675 | - | - | - |
Deep-Palm: 0.02
|
|
| 681 | - | - | - |
Deep-Palm: 0.03
|
|
| 688 | - | - | - |
Deep-Palm: 0.03
|
|
| 701 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.82
|
|
| 739 | - | - | - |
GPS-Palm: 0.66
Deep-Palm: 0.92
|
|
| 762 | - | - | - |
Deep-Palm: 0.56
|
|
| 804 | - | - | - |
Deep-Palm: 0.44
|
|
| 811 | SWISSPALM DBPTM CYSMODDB | Plexin repeat | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.20
|
| 814 | SWISSPALM DBPTM CYSMODDB | Plexin repeat | - | - |
Deep-Palm: 0.21
|
| 823 | - | - | - |
Deep-Palm: 0.35
|
|
| 826 | - | - | - |
Deep-Palm: 0.39
|
|
| 832 | - | - | - |
Deep-Palm: 0.08
|
|
| 838 | - | - | - |
Deep-Palm: 0.49
|
|
| 855 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.81
|
|
| 901 | - | - | - |
Deep-Palm: 0.87
|
|
| 916 | - | - | - |
Deep-Palm: 0.65
|
|
| 933 | - | - | - |
Deep-Palm: 0.68
|
|
| 937 | - | - | - |
Deep-Palm: 0.27
|
|
| 994 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.20
|
|
| 1006 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.50
|
|
| 1086 | - | - | - |
Deep-Palm: 0.53
|
|
| 1096 | - | - | - |
Deep-Palm: 0.38
|
|
| 1190 | - | - | - |
Deep-Palm: 0.83
|
|
| 1201 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.90
|
|
| 1289 | - | - | - |
Deep-Palm: 0.69
|
|
| 1453 | - | - | - |
GPS-Palm: 0.71
Deep-Palm: 0.49
|
|
| 1463 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.77
|
|
| 1504 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.88
|
|
| 1522 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.79
|
|
| 1542 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.93
|
|
| 1742 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.16
|
|
| 1770 | - | - | - |
Deep-Palm: 0.11
|
|
| 1782 | - | - | - |
GPS-Palm: 0.68
Deep-Palm: 0.65
|
|
| 1874 | - | - | - |
Deep-Palm: 0.87
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Cerebral Cortex (Mass)
Specificity: 1.000
2/4 (50.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 300 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 302 | R → C | 0.002545 | SNP | Missense Mutation | GBM |
| 308 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 516 | C → C | 0.001887 | SNP | Silent | UCEC |
| 527 | C → C | 0.001969 | SNP | Silent | HNSC |
| 824 | G → C | 0.001764 | SNP | Missense Mutation | LUAD |
| 835 | R → C | 0.019608 | SNP | Missense Mutation | CHOL |
| 835 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 855 | C → Y | 0.001969 | SNP | Missense Mutation | HNSC |
| 888 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 888 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 901 | C → Y | 0.003460 | SNP | Missense Mutation | CESC |
| 933 | C → Y | 0.001764 | SNP | Missense Mutation | LUAD |
| 966 | M → Cfs*7 | 0.002288 | DEL | Frame Shift Del | STAD |
| 966 | M → Cfs*7 | 0.002506 | DEL | Frame Shift Del | COAD |
| 994 | C → S | 0.002747 | SNP | Missense Mutation | LIHC |
| 1003 | Y → C | 0.002545 | SNP | Missense Mutation | GBM |
| 1086 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 1201 | C → C | 0.001887 | SNP | Silent | UCEC |
| 1227 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |
| 1262 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 1320 | Y → C | 0.001969 | SNP | Missense Mutation | LGG |
| 1325 | L → Cfs*29 | 0.003559 | INS | Frame Shift Ins | KIRP |
| 1342 | G → C | 0.002288 | SNP | Missense Mutation | STAD |
| 1347 | R → C | 0.005618 | SNP | Missense Mutation | PAAD |
| 1381 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 1381 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 1463 | C → G | 0.002747 | SNP | Missense Mutation | LIHC |
| 1559 | S → C | 0.002288 | SNP | Missense Mutation | STAD |
| 1619 | S → C | 0.002545 | SNP | Missense Mutation | GBM |
| 1742 | C → C | 0.002033 | SNP | Splice Region | LUSC |
| 1770 | C → G | 0.002033 | SNP | Missense Mutation | LUSC |
| 356* | C → ? | 0.001764 | SNP | Nonsense Mutation | LUAD |
| 1201* | C → ? | 0.002033 | SNP | Nonsense Mutation | LUSC |
| 688* | C → ? | 0.001887 | SNP | Nonsense Mutation | UCEC |