Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9JHK4 | Rabggta | Geranylgeranyl transferase type-2 subunit alpha … | Mus musculus (Mouse) | 567 aa |
Protein Details: Q9JHK4 (Rabggta)
Protein Information
| Accession | Q9JHK4 |
|---|---|
| Protein Names | Geranylgeranyl transferase type-2 subunit alpha (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit alpha) (Rab geranyl-geranyltransferase subunit alpha) (Rab GG transferase alpha) (Rab GGTase alpha) (Rab geranylgeranyltransferase subunit alpha) |
| Gene Symbol | Rabggta |
| Organism | Mus musculus (Mouse) |
| Length | 567 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 34200797 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MHGRLKVKTS11EEQAEAKRLE21REQKLKLYQS31ATQAVFQKRE41AGELDESVLE
51-10051LTSQILGANP61DFATLWNCRR71EVLQQLETQK81SPEELAALVK91AELGFLESCL
101-150101RVNPKSYGTW111HHRCWLLSRL121PEPNWARELE131LCARFLEADE141RNFHCWDYRR
151-200151FVAAQAAVAP161AEELAFTDSL171ITRNFSNYSS181WHYRSCLLPQ191LHPQPDSGPQ
201-250201GRLPENVLLR211ELELVQNAFF221TDPNDQSAWF231YHRWLLGRAE241PHDVLCCLHV
251-300251SREEACLSVC261FSRPLIVGSK271MGTLLLTVDE281APLSVEWRTP291DGRNRPSHVW
301-350301LCDLPAASLN311DHLPQHTFRV321IWTGSDTQKE331CVLLKGHQEC341WCRDSATDEQ
351-400351LFRCELSVEK361STVLQSELES371CKELQELEPE381NKWCLLTIIL391LMRALDPLLY
401-450401EKETLEYFST411LKAVDPMRAA421YLDDLRSKFL431VENSVLKMEY441ADVRVLHLAH
451-500451KDLTVLCHLE461QLLLVTHLDL471SHNRLRALPP481ALAALRCLEV491LQASDNVLEN
501-550501LDGVANLPRL511RELLLCNNRL521QQSAALQTLA531SCPRLVFLNL541QGNSLCQEEG
551-567551IRERLAEMLP561SVSSILT
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 68 | - | - | - |
Deep-Palm: 0.91
|
|
| 99 | SWISSPALM DBPTM CYSMODDB | Protein prenyltransferase alpha subunit repeat |
Liver
(28526873)
| - |
GPS-Palm: 0.94
Deep-Palm: 0.83
|
| 114 | - | - | - |
Deep-Palm: 0.86
|
|
| 132 | - | - | - |
Deep-Palm: 0.89
|
|
| 145 | - | - | - |
Deep-Palm: 0.45
|
|
| 186 | - | - | - |
Deep-Palm: 0.40
|
|
| 246 | - | - | - |
Deep-Palm: 0.84
|
|
| 247 | - | - | - |
Deep-Palm: 0.90
|
|
| 256 | - | - | - |
Deep-Palm: 0.91
|
|
| 260 | - | - | - |
Deep-Palm: 0.96
|
|
| 302 | - | - | - |
Deep-Palm: 0.66
|
|
| 331 | - | - | - |
Deep-Palm: 0.13
|
|
| 340 | - | - | - |
Deep-Palm: 0.20
|
|
| 342 | - | - | - |
Deep-Palm: 0.28
|
|
| 354 | - | - | - |
Deep-Palm: 0.60
|
|
| 371 | - | - | - |
Deep-Palm: 0.94
|
|
| 384 | - | - | - |
Deep-Palm: 0.96
|
|
| 457 | - | - | - |
Deep-Palm: 0.97
|
|
| 487 | Leucine Rich repeats (2 copies) |
Brain
(34200797)
| - |
Deep-Palm: 0.98
|
|
| 516 | - | - | - |
Deep-Palm: 0.98
|
|
| 532 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.97
|
|
| 546 | - | - | - |
Deep-Palm: 0.95
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
Liver
Specificity: 0.571
4/4 (100.0%)
3
Brain
Specificity: 0.429
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.