Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9JIF7 | Copb1 | Coatomer subunit beta (Beta-coat protein) … | Mus musculus (Mouse) | 953 aa |
Protein Details: Q9JIF7 (Copb1)
Protein Information
| Accession | Q9JIF7 |
|---|---|
| Protein Names | Coatomer subunit beta (Beta-coat protein) (Beta-COP) |
| Gene Symbol | Copb1 |
| Organism | Mus musculus (Mouse) |
| Length | 953 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 29733200 34884899 35477839 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MTAAENVCYT11LINVPMDSEP21PSEISLKNDL31EKGDVKSKTE41ALKKVIIMIL
51-10051NGEKLPGLLM61TIIRFVLPLQ71DHTIKKLLLV81FWEIVPKTTP91DGRLLHEMIL
101-150101VCDAYRKDLQ111HPNEFIRGST121LRFLCKLKEA131ELLEPLMPAI141RACLEHRHSY
151-200151VRRNAVLAIY161TIYRNFEHLI171PDAPELIHDF181LVNEKDASCK191RNAFMMLIHA
201-250201DQDRALDYLS211TCIDQVQTFG221DILQLVIVEL231IYKVCHANPS241ERARFIRCIY
251-300251NLLQSSSPAV261KYEAAGTLVT271LSSAPTAIKA281AAQCYIDLII291KESDNNVKLI
301-350301VLDRLVELKE311HPAHERVLQD321LVMDILRVLS331TPDLEVRKKT341LQLALDLVSS
351-400351RNVEELVIVL361KKEVIKTNNV371SEHEDTDKYR381QLLVRTLHSC391SVRFPDMAAN
401-450401VIPVLMEFLS411DSNEAAAADV421LEFVREAIQR431FDNLRMLIVE441KMLEVFHAIK
451-500451SVKIYRGALW461ILGEYCSTKE471DIQSVMTEVR481RSLGEIPIVE491SEIKKEAGEL
501-550501KPEEEITVGP511VQKLVTEMGT521YATQSALSSS531RPTKKEEDRP541PLRGFLLDGD
551-600551FFVAASLATT561LTKIALRYVA571LVQEKKKQNS581FVAEAMLLMA591TILHLGKSSL
601-650601PKKPITDDDV611DRISLCLKVL621SECSPLMNDI631FNKECRQSLS641QMLSAKLEEE
651-700651KLSQKKESEK661RNVTVQPDDP671ISFMQLTAKN681EMNCKEDQFQ691LSLLAAMGNT
701-750701QRKEAADPLA711SKLNKVTQLT721GFSDPVYAEA731YVHVNQYDIV741LDVLVVNQTS
751-800751DTLQNCTLEL761ATLGDLKLVE771KPSPLTLAPH781DFANIKANVK791VASTENGIIF
801-850801GNIVYDVSGA811ASDRNCVVLS821DIHIDIMDYI831QPATCTDAEF841RQMWAEFEWE
851-900851NKVTVNTNMT861DLNDYLQHIL871KSTNMKCLTP881EKALSGYCGF891MAANLYARSI
901-950901FGEDALANVS911IEKPVHQGPD921AAVTGHIRIR931AKSQGMALSL941GDKINLSQKK
951-953951TSL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 8 | - | - | - |
Deep-Palm: 0.02
|
|
| 102 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.92
|
|
| 125 | - | - | - |
Deep-Palm: 0.97
|
|
| 143 | - | - | - |
Deep-Palm: 0.98
|
|
| 189 | - | - | - |
Deep-Palm: 0.47
|
|
| 212 | - | - | - |
Deep-Palm: 0.83
|
|
| 235 | - | - | - |
Deep-Palm: 0.74
|
|
| 248 | - | - | - |
Deep-Palm: 0.79
|
|
| 284 | - | - | - |
Deep-Palm: 0.95
|
|
| 390 | - | - | - |
Deep-Palm: 0.95
|
|
| 466 | SWISSPALM DBPTM CYSMODDB | Adaptin N terminal region |
Liver
(28526873)
| - |
Deep-Palm: 0.90
|
| 616 | - | - | - |
Deep-Palm: 0.89
|
|
| 623 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
Deep-Palm: 0.83
|
| 635 | - | - | - |
Deep-Palm: 0.81
|
|
| 684 | - | - | - |
Deep-Palm: 0.36
|
|
| 756 | - | - | - |
Deep-Palm: 0.92
|
|
| 816 | - | - | - |
Deep-Palm: 0.05
|
|
| 835 | - | - | - |
Deep-Palm: 0.03
|
|
| 877 | - | - | - |
Deep-Palm: 0.84
|
|
| 888 | - | - | - |
Deep-Palm: 0.87
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
6
Liver
Specificity: 0.600
6/6 (100.0%)
2
Brain
Specificity: 0.200
2/2 (100.0%)
2
Testis
Specificity: 0.200
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.