Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9JJY3 | Smpd3 | Sphingomyelin phosphodiesterase 3 (EC 3.1.4.12) … | Mus musculus (Mouse) | 655 aa |
Protein Details: Q9JJY3 (Smpd3)
Protein Information
| Accession | Q9JJY3 |
|---|---|
| Protein Names | Sphingomyelin phosphodiesterase 3 (EC 3.1.4.12) (Neutral sphingomyelinase 2) (nSMase-2) (nSMase2) (Neutral sphingomyelinase II) |
| Gene Symbol | Smpd3 |
| Organism | Mus musculus (Mouse) |
| Length | 655 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVLYTTPFPN11SCLSALHAVS21WALIFPCYWL31VDRLLASFIP41TTYEKRQRAD
51-10051DPCCLQLFCT61VLFTPVYLAL71LVAALPFAFL81GFIFWSPLQS91ARRPYSYSRL
101-150101EDKNPAGGAA111LLSEWKGTGA121GKSFCFATAN131VCLLPDSLAR141LNNVFNTQAR
151-200151AKEIGQRIRN161GAARPQIKIY171IDSPTNTSIS181AASFSSLVSP191QGGDGSRAVP
201-250201GSIKRTASVE211YKGDGGRHPS221DEAANGPASG231EQADGSLEDS241CIVRIGGEEG
251-300251GRPQEADDPA261AGSQARNGAG271GTPKGQTPNH281NQRDGDSGSL291GSPSASRESL
301-350301VKARAGQDSG311GSGEPGANSK321LLYKTSVVKK331AAARRRRHPD341EAFDHEVSAF
351-400351FPANLDFLCL361QEVFDKRAAA371KLKEQLHGYF381EYILYDVGVY391GCHGCCNFKC
401-450401LNSGLFFASR411YPVMDVAYHC421YPNGCSFDAL431ASKGALFLKV441QVGSTPQDQR
451-500451IVGYIACTHL461HAPPEDSAVR471CEQLDLLQDW481LADFRKSTSS491TSTANPEELV
501-550501VFDVICGDLN511FDNCSSDDKL521EQQHSLFTRY531KDPCRLGPGE541EKPWAIGTLL
551-600551DTNGLYDEDV561CTPDNLQKVL571ESEEGRREYL581AFPTSKSPGA591GQKGRKDLLK
601-650601GNGRRIDYML611HAEEGLCPDW621KAEVEEFSFI631TQLSGLTDHL641PVAMRLMVSA
651-655651GEEEA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 12 | - | - | - |
Deep-Palm: 0.03
|
|
| 27 | Sphingomyelinase C/Sphingomyelin phosphodiesterase 2-like | - | - |
Deep-Palm: 0.74
|
|
| 53 | DBPTM SWISSPALM | - | - | - |
Deep-Palm: 0.41
|
| 54 | DBPTM SWISSPALM | - | - | - |
Deep-Palm: 0.52
|
| 59 | DBPTM SWISSPALM | - | - | - |
Deep-Palm: 0.96
|
| 125 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.97
|
|
| 132 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.96
|
| 241 | - | - | - |
Deep-Palm: 0.96
|
|
| 359 | - | - | - |
Deep-Palm: 0.97
|
|
| 392 | - | - | - |
Deep-Palm: 0.04
|
|
| 395 | DBPTM SWISSPALM | - | - | - |
Deep-Palm: 0.09
|
| 396 | DBPTM SWISSPALM | - | - | - |
Deep-Palm: 0.07
|
| 400 | - | - | - |
Deep-Palm: 0.11
|
|
| 420 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
Deep-Palm: 0.41
|
| 425 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
Deep-Palm: 0.75
|
| 457 | - | - | - |
Deep-Palm: 0.86
|
|
| 471 | - | - | - |
Deep-Palm: 0.91
|
|
| 506 | - | - | - |
Deep-Palm: 0.34
|
|
| 514 | - | - | - |
Deep-Palm: 0.12
|
|
| 534 | - | - | - |
Deep-Palm: 0.89
|
|
| 561 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.94
|
|
| 617 | - | - | - |
Deep-Palm: 0.49
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
4
Liver
Specificity: 0.364
4/4 (100.0%)
2
Brain
Specificity: 0.182
2/2 (100.0%)
2
Testis
Specificity: 0.182
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Brain tissue (Mass)
Specificity: 0.273
3/56 (5.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.