Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9JJZ2 | Tuba8 | Tubulin alpha-8 chain (EC 3.6.5.-) … | Mus musculus (Mouse) | 449 aa |
Protein Details: Q9JJZ2 (Tuba8)
Protein Information
| Accession | Q9JJZ2 |
|---|---|
| Protein Names | Tubulin alpha-8 chain (EC 3.6.5.-) (Alpha-tubulin 8) [Cleaved into: Dephenylalaninated tubulin alpha-8 chain] |
| Gene Symbol | Tuba8 |
| Organism | Mus musculus (Mouse) |
| Length | 449 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 29733200 34200797 34884899 35358180 35477839 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MRECISVHVG11QAGVQIGNAC21WELFCLEHGI31QADGTFGTQA41SKINDDDSFT
51-10051TFFSETGNGK61HVPRAVMVDL71EPTVVDEVRA81GTYRQLFHPE91QLITGKEDAA
101-150101NNYARGHYTV111GKESIDLVLD121RIRKLTDACS131GLQGFLIFHS141FGGGTGSGFT
151-200151SLLMERLSLD161YGKKSKLEFA171IYPAPQVSTA181VVEPYNSILT191THTTLEHSDC
201-250201AFMVDNEAIY211DICRRNLDIE221RPTYTNLNRL231ISQIVSSITA241SLRFDGALNV
251-300251DLTEFQTNLV261PYPRIHFPLV271TYAPIISAEK281AYHEQLSVAE291ITSSCFEPNS
301-350301QMVKCDPRHG311KYMACCMLYR321GDVVPKDVNV331AIAAIKTKRT341IQFVDWCPTG
351-400351FKVGINYQPP361TVVPGGDLAK371VQRAVCMLSN381TTAIAEAWAR391LDHKFDLMYA
401-449401KRAFVHWYVG411EGMEEGEFSE421AREDLAALEK431DYEEVGTDSF441EEENEGEEF
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 4 | Tubulin/FtsZ, GTPase domain superfamily | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.02
|
|
| 20 | Tubulin/FtsZ, GTPase domain Tubulin/FtsZ, GTPase domain superfamily | - | - |
Deep-Palm: 0.58
|
|
| 25 | Tubulin/FtsZ, GTPase domain superfamily Tubulin/FtsZ, GTPase domain Alpha tubulin | - | - |
Deep-Palm: 0.33
|
|
| 129 | - | - | - |
Deep-Palm: 0.65
|
|
| 200 | - | - | - |
Deep-Palm: 0.07
|
|
| 213 | - | - | - |
Deep-Palm: 0.16
|
|
| 295 | - | - | - |
Deep-Palm: 0.18
|
|
| 305 | - | - | - |
Deep-Palm: 0.05
|
|
| 315 | - | - | - |
Deep-Palm: 0.19
|
|
| 316 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.33
|
|
| 347 | SWISSPALM DBPTM CYSMODDB | Tubulin C-terminal domain |
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.37
|
| 376 | - | - |
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.92
Deep-Palm: 0.97
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.556
5
Brain
Specificity: 0.139
5/5 (100.0%)
2
Liver
Specificity: 0.056
2/2 (100.0%)
2
Testis
Specificity: 0.056
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
27
Brain tissue (Mass)
Specificity: 0.750
27/56 (48.2%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.