Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9JL56 | Gde1 | Glycerophosphodiester phosphodiesterase 1 (Glycerophosphoinositol glycerophosphodiesterase … | Mus musculus (Mouse) | 331 aa |
Protein Details: Q9JL56 (Gde1)
Protein Information
| Accession | Q9JL56 |
|---|---|
| Protein Names | Glycerophosphodiester phosphodiesterase 1 (Glycerophosphoinositol glycerophosphodiesterase GDE1) (EC 3.1.4.44) (Lysophospholipase D GDE1) (EC 3.1.4.-) (Membrane-interacting protein of RGS16) |
| Gene Symbol | Gde1 |
| Organism | Mus musculus (Mouse) |
| Length | 331 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 29733200 35477839 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MWLWEDQGGL11LGPFSFVLVL21LLVVTRSPFN31ACVLTGSLYI41LLRFFSFEPV
51-10051PSRRALQVLK61PRDRVSAIAH71RGGSHDAPEN81TLAAIRQAAK91NGATGVELDI
101-150101EFTSDGVPVL111MHDNTVDRTT121DGSGRLCDLT131FEQVRKLNPA141ANHRLRNEFP
151-200151DERIPTLKEA161VTECLRHNLT171IFFDVKGHAD181MASAALKNIY191TEFPQLYNNS
201-250201MVCSFLPEVI211YKMRQTDQKV221ITALTHRPWS231LSHTGDGKPR241YSVFWKQSVF
251-300251VVLDILLDWS261MHNVLWYLCG271ISAFLMQKDF281VSPDYLKKWS291AKGIQVVSWT
301-331301VNTFDEKNYY311ESHLGSSYIT321DSMLEDCAPH331F
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 32 | - | - | - |
Deep-Palm: 0.98
|
|
| 127 | SWISSPALM DBPTM CYSMODDB | Glycerophosphoryl diester phosphodiesterase family |
Liver
(28526873)
| - |
Deep-Palm: 0.94
|
| 164 | - | - | - |
Deep-Palm: 0.79
|
|
| 203 | - | - | - |
Deep-Palm: 0.10
|
|
| 269 | - | - | - |
Deep-Palm: 0.17
|
|
| 327 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.01
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
2
Brain
Specificity: 0.500
2/2 (100.0%)
1
Liver
Specificity: 0.250
1/1 (100.0%)
1
Testis
Specificity: 0.250
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.