Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9NP58-4 | ABCB6 | ATP-binding cassette sub-family B member … | Homo sapiens (Human) | 796 aa |
Protein Details: Q9NP58-4 (ABCB6)
Protein Information
| Accession | Q9NP58-4 |
|---|---|
| Protein Names | ATP-binding cassette sub-family B member 6 (ABC-type heme transporter ABCB6) (EC 7.6.2.5) (Mitochondrial ABC transporter 3) (Mt-ABC transporter 3) (P-glycoprotein-related protein) (Ubiquitously-expressed mammalian ABC half transporter) |
| Gene Symbol | ABCB6 |
| Organism | Homo sapiens (Human) |
| Length | 796 aa |
| Isoforms | |
| Related PMIDs | 29575903 31251020 33636221 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVTVGNYCEA11EGPVGPAWMQ21DGLSPCFFFT31LVPSTRMALG41TLALVLALPC
51-10051RRRERPAGAD61SLSWGAGPRI71SPYVLQLLLA81TLQAALPLAG91LAGRVGTARG
101-150101APLPSYLLLA111SVLESLAGAC121GLWLLVVERS131QARQRLAMGI141WIKFRHSPGL
151-200151LLLWTVAFAA161ENLALVSWNS171PQWWWARADL181GQQVRSAAQQ191STWRDFGRKL
201-250201RLLSGYLWPR211GSPALQLVVL221ICLGLMGLER231ALNVLVPIFY241RNIVNLLTEK
251-300251APWNSLAWTV261TSYVFLKFLQ271GGGTGSTGFV281SNLRTFLWIR291VQQFTSRRVE
301-350301LLIFSHLHEL311SLRWHLGRRT321GEVLRIADRG331TSSVTGLLSY341LVFNVIPTLA
351-400351DIIIGIIYFS361MFFNAWFGLI371VFLCMSLYLT381LTIVVTEWRT391KFRRAMNTQE
401-450401NATRARAVDS411LLNFETVKYY421NAESYEVERY431REAIIKYQGL441EWKSSASLVL
451-500451LNQTQNLVIG461LGLLAGSLLC471AYFVTEQKLQ481VGDYVLFGTY491IIQLYMPLNW
501-550501FGTYYRMIQT511NFIDMENMFD521LLKEETEVKD531LPGAGPLRFQ541KGRIEFENVH
551-600551FSYADGRETL561QDVSFTVMPG571QTLALVGPSG581AGKSTILRLL591FRFYDISSGC
601-650601IRIDGQDISQ611VTQASLRSHI621GVVPQDTVLF631NDTIADNIRY641GRVTAGNDEV
651-700651EAAAQAAGIH661DAIMAFPEGY671RTQVGERGLK681LSGGEKQRVA691IARTILKAPG
701-750701IILLDEATSA711LDTSNERAIQ721ASLAKVCANR731TTIVVAHRLS741TVVNADQILV
751-796751IKDGCIVERG761RHEALLSRGG771VYADMWQLQQ781GQEETSEDTK791PQTMER
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 8 | ATP-binding cassette sub-family B member 6, N-terminal five TM domain | - | - |
Deep-Palm: 0.02
|
|
| 26 | ATP-binding cassette sub-family B member 6, N-terminal five TM domain | - | - |
Deep-Palm: 0.82
|
|
| 50 | - |
HeLa
(29575903)
| - |
GPS-Palm: 0.95
Deep-Palm: 0.99
|
|
| 120 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.97
|
|
| 222 | - | - | - |
GPS-Palm: 0.87
|
|
| 268 | - | - | - |
Deep-Palm: 0.98
|
|
| 420 | - | - | - |
Deep-Palm: 0.05
|
|
| 470 | - | - | - |
GPS-Palm: 0.84
|
|
| 516 | - | - | - |
Deep-Palm: 0.97
|
|
| 600 | - | - | - |
GPS-Palm: 0.89
|
|
| 646 | - | - | - |
Deep-Palm: 0.97
|
|
| 727 | - | - | - |
GPS-Palm: 0.86
|
|
| 755 | - | - | - |
GPS-Palm: 0.90
|
|
| 773 | - | - | - |
Deep-Palm: 0.97
|
|
| 801 | - | - | - |
Deep-Palm: 0.98
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
4
LNCaP
Specificity: 0.667
4/4 (100.0%)
1
HeLa cell
Specificity: 0.167
1/1 (100.0%)
1
heart
Specificity: 0.167
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 210 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 214 | Y → C | 0.001764 | SNP | Missense Mutation | LUAD |
| 286 | Y → C | 0.002294 | SNP | Missense Mutation | OV |
| 359 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 409 | F → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 471 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 513 | S → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 634 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |