Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9NQX1 | PRDM5 | PR domain zinc finger protein … | Homo sapiens (Human) | 630 aa |
Protein Details: Q9NQX1 (PRDM5)
Protein Information
| Accession | Q9NQX1 |
|---|---|
| Protein Names | PR domain zinc finger protein 5 (EC 2.1.1.-) (PR domain-containing protein 5) |
| Gene Symbol | PRDM5 |
| Organism | Homo sapiens (Human) |
| Length | 630 aa |
| Isoforms | No isoforms |
| Related PMIDs | No related PMIDs |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MLGMYVPDRF11SLKSSRVQDG21MGLYTARRVR31KGEKFGPFAG41EKRMPEDLDE
51-10051NMDYRLMWEV61RGSKGEVLYI71LDATNPRHSN81WLRFVHEAPS91QEQKNLAAIQ
101-150101EGENIFYLAV111EDIETDTELL121IGYLDSDMEA131EEEEQQIMTV141IKEGEVENSR
151-200151RQSTAGRKDR161LGCKEDYACP171QCESSFTSED181ILAEHLQTLH191QKPTEEKEFK
201-250201CKNCGKKFPV211KQALQRHVLQ221CTAKSSLKES231SRSFQCSVCN241SSFSSASSFE
251-300251QHQETCRGDA261RFVCKADSCG271KRLKSKDALK281RHQENVHTGD291PKKKLICSVC
301-350301NKKCSSASSL311QEHRKIHEIF321DCQECMKKFI331SANQLKRHMI341THSEKRPYNC
351-400351EICNKSFKRL361DQVGAHKVIH371SEDKPYKCKL381CGKGFAHRNV391YKNHKKTHSE
401-450401ERPFQCEECK411ALFRTPFSLQ421RHLLIHNSER431TFKCHHCDAT441FKRKDTLNVH
451-500451VQVVHERHKK461YRCELCNKAF471VTPSVLRSHK481KTHTGEKEKI491CPYCGQKFAS
501-550501SGTLRVHIRS511HTGERPYQCP521YCEKGFSKND531GLKMHIRTHT541REKPYKCSEC
551-600551SKAFSQKRGL561DEHKRTHTGE571KPFQCDVCDL581AFSLKKMLIR591HKMTHNPNRP
601-630601LAECQFCHKK611FTRNDYLKVH621MDNIHGVADS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 163 | - | - | - |
Deep-Palm: 0.50
|
|
| 169 | - | - | - |
Deep-Palm: 0.42
|
|
| 172 | - | - | - |
Deep-Palm: 0.14
|
|
| 201 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.53
|
|
| 204 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.47
|
|
| 221 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.83
|
|
| 236 | - | - | - |
Deep-Palm: 0.43
|
|
| 239 | - | - | - |
Deep-Palm: 0.21
|
|
| 256 | - | - | - |
Deep-Palm: 0.12
|
|
| 264 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.47
|
|
| 269 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.48
|
|
| 297 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.32
|
|
| 300 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.40
|
|
| 304 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.30
|
|
| 322 | - | - | - |
Deep-Palm: 0.17
|
|
| 325 | - | - | - |
Deep-Palm: 0.04
|
|
| 350 | - | - | - |
Deep-Palm: 0.11
|
|
| 353 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.06
|
|
| 378 | - | - | - |
Deep-Palm: 0.34
|
|
| 381 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.16
|
|
| 406 | - | - | - |
Deep-Palm: 0.54
|
|
| 409 | - | - | - |
Deep-Palm: 0.61
|
|
| 434 | - | - | - |
Deep-Palm: 0.13
|
|
| 437 | - | - | - |
Deep-Palm: 0.04
|
|
| 463 | SWISSPALM DBPTM CYSMODDB | Zinc finger C2H2 type | - | - |
Deep-Palm: 0.52
|
| 466 | SWISSPALM DBPTM CYSMODDB | Zinc finger C2H2 type | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.52
|
| 491 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.75
|
|
| 494 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.44
|
|
| 519 | - | - | - |
Deep-Palm: 0.22
|
|
| 522 | - | - | - |
Deep-Palm: 0.09
|
|
| 547 | - | - | - |
Deep-Palm: 0.37
|
|
| 550 | - | - | - |
Deep-Palm: 0.29
|
|
| 575 | - | - | - |
Deep-Palm: 0.56
|
|
| 578 | - | - | - |
GPS-Palm: 0.65
Deep-Palm: 0.22
|
|
| 604 | - | - | - |
Deep-Palm: 0.04
|
|
| 607 | - | - | - |
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 27 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 32 | G → C | 0.002427 | SNP | Missense Mutation | BLCA |
| 61 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 61 | R → C | 0.004283 | SNP | Missense Mutation | SKCM |
| 81 | W → C | 0.002033 | SNP | Missense Mutation | LUSC |
| 83 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 83 | R → C | 0.003460 | SNP | Missense Mutation | CESC |
| 160 | R → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 249 | F → C | 0.007299 | SNP | Missense Mutation | READ |
| 304 | C → C | 0.002288 | SNP | Silent | STAD |
| 322 | C → C | 0.001887 | SNP | Silent | UCEC |
| 329 | F → C | 0.002506 | SNP | Missense Mutation | COAD |
| 406 | C → F | 0.001764 | SNP | Missense Mutation | LUAD |
| 409 | C → C | 0.001887 | SNP | Silent | UCEC |
| 437 | C → C | 0.001887 | SNP | Silent | UCEC |
| 466 | C → C | 0.001887 | SNP | Silent | UCEC |
| 494 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 537 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 537 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 550 | C → R | 0.001887 | SNP | Missense Mutation | UCEC |
| 604 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 611 | F → C | 0.002427 | SNP | Missense Mutation | BLCA |