Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9NXR1 | NDE1 | Nuclear distribution protein nudE homolog … | Homo sapiens (Human) | 335 aa |
Protein Details: Q9NXR1 (NDE1)
Protein Information
| Accession | Q9NXR1 |
|---|---|
| Protein Names | Nuclear distribution protein nudE homolog 1 (NudE) |
| Gene Symbol | NDE1 |
| Organism | Homo sapiens (Human) |
| Length | 335 aa |
| Isoforms | No isoforms |
| Related PMIDs | No related PMIDs |
| Database Sources | dbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MEDSGKTFSS11EEEEANYWKD21LAMTYKQRAE31NTQEELREFQ41EGSREYEAEL
51-10051ETQLQQIETR61NRDLLSENNR71LRMELETIKE81KFEVQHSEGY91RQISALEDDL
101-150101AQTKAIKDQL111QKYIRELEQA121NDDLERAKRA131TIMSLEDFEQ141RLNQAIERNA
151-200151FLESELDEKE161NLLESVQRLK171DEARDLRQEL181AVQQKQEKPR191TPMPSSVEAE
201-250201RTDTAVQATG211SVPSTPIAHR221GPSSSLNTPG231SFRRGLDDST241GGTPLTPAAR
251-300251ISALNIVGDL261LRKVGALESK271LASCRNLVYD281QSPNRTGGPA291SGRSSKNRDG
301-335301GERRPSSTSV311PLGDKGLDTS321CRWLSKSTTR331SSSSC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 274 | DBPTM SWISSPALM | NUDE protein C-terminal conserved region | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.98
|
| 321 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.93
|
|
| 335 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 10 | S → C | 0.002427 | SNP | Missense Mutation | BLCA |
| 193 | M → Cfs*34 | 0.002506 | DEL | Frame Shift Del | COAD |