Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9QZQ1 | Afdn | Afadin (Afadin adherens junction formation … | Mus musculus (Mouse) | 1820 aa |
Protein Details: Q9QZQ1 (Afdn)
Protein Information
| Accession | Q9QZQ1 |
|---|---|
| Protein Names | Afadin (Afadin adherens junction formation factor) (Protein Af-6) |
| Gene Symbol | Afdn |
| Organism | Mus musculus (Mouse) |
| Length | 1820 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35358180 37925639 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSAGGRDEER11RKLADIIHHW21NANRLDLFEI31SQPTEDLEFH41GVMRFYFQDK
51-10051AAGNFATKCI61RVSSTATTQD71VIETLAEKFR81PDMRMLSSPK91YSLYEVHVSG
101-150101ERRLDIDEKP111LVVQLNWNKD121DREGRFVLKN131ENDAIPAKKA141QSNGPEKQEK
151-200151EGVIQNFKRT161LSKKEKKEKK171KKEKEALRQA181SDKEERPSQG191DDSENSRLAA
201-250201EVYKDMPETS211FTRTISNPEV221VMKRRRQQKL231EKRMQEFRSS241DGRPDSGGTL
251-300251RIYADSLKPN261IPYKTILLST271TDTADFAVAE281SLEKYGLEKE291NPKDYCIARV
301-350301MLPPGAQHSD311ERGAKEIILD321DDECPLQIFR331EWPSDKGILV341FQLKRRPPDY
351-400351IPKKMKKHVE361GKSLKGKDRA371DGSGYGSALP381PEKLPYLVEL391SPGRRNHFAY
401-450401YSYHTYEDGS411DSRDKPKLYR421LQLSVTEVGT431EKFDDNSIQL441FGPGIQPHHC
451-500451DLTNMDGVVT461VTPRSMDAET471YVDGQRISET481TMLQSGMRLQ491FGTSHVFKFV
501-550501DPIQDHVLSK511RSVDGGLMVK521GPRHKPGAVQ531ETTFELGGDV541HSGTALPASR
551-600551STTRLDSDRV561SSASSTAERG571MVKPMIRLDQ581EQEYRRRENR591TQDATGPELI
601-650601LPASIEFRES611SEDSFLSAII621NYTNSSTVHF631KLSPTYVLYM641ACRYVLSSQH
651-700651RPDISPTERT661HKAIAVVNKM671VSMMEGVIQK681QKNIAGALAF691WMANASELLN
701-750701FIKQDRDLSR711ITLDAQDVLA721HLVQMAFKYL731VHCLQSELNN741YMPAFLDDPE
751-800751ENSLQRPKID761DVLHTLTGAM771SLLRRCRVNA781ALTIQLFSQL791FHFINMWLFN
801-850801RLVTDPDSGL811CSHYWGAIIR821QQLGHIEAWA831EKQGLELAAD841CHLSRIVQAT
851-900851TLLTMDKYVP861DDIPNINSTC871FKLNSLQLQA881LLQNYHCAPD891EPFIPTDLIE
901-950901NVVAVAENTA911DELARSDGRD921VQLEEDPDLQ931LPFLLPEDGY941SCDVVRNIPN
951-1000951GLQEFLDPLC961QRGFCRLVPH971TRSPGTWTIY981FEGADYESHL991MRENAELAQP
1001-10501001LRKEPEIITV1011TLKKQNGMGL1021SIVAAKGAGQ1031DKLGIYVKSV1041VKGGAADVDG
1051-11001051RLAAGDQLLS1061VDGRSLVGLS1071QERAAELMTR1081TSSVVTLEVA1091KQGAIYHGLA
1101-11501101TLLNQPSPMM1111QRISDRRGSG1121KPRPKSEGFE1131LYNNSAQNGS1141PESPQMPWTE
1151-12001151YSEPKKLPGD1161DRLMKNRADH1171RSSPNVANQP1181PSPGGKGPYT1191SGTAAKITSV
1201-12501201STGNLCTEEQ1211SPPPRPEAYP1221IPTQTYTREY1231FTFPASKSQD1241RMAPPQSQWP
1251-13001251NYEEKPHVHT1261ESNHSSIAIQ1271RVTRSQEELR1281EEKVYQLERH1291RVEAGMDRKC
1301-13501301DSDMWINQSS1311SVESSTSSQE1321HLNHSSKSVT1331PASTLTKSGP1341GRWKTPAAVL
1351-14001351PTPVAVSQPI1361RTDLPPPPPP1371PPVHYTSEFD1381GIPMDLPLPP1391PPANQAGPQS
1401-14501401AQVAAAEWKK1411REEHQRWYEK1421EKARLEEERE1431RKRREQERKL1441GQMRSQTLNP
1451-15001451ASFSPLATQA1461KPEKPSTLQR1471PQETVIRELQ1481PQQQPRTIER1491KDLQYITISK
1501-15501501EELSSGDSLS1511PDPWKRDARE1521KLEKQQQMHI1531VDMLSKEIHE1541LQNKVDRTAE
1551-16001551ESDRLRKLML1561EWQFQKRLQE1571SKQKDEDDDE1581EEDDDVDTML1591IMQRLEAERR
1601-16501601ARMQDEERRR1611QQQLEEMRKR1621EAEDRVRQEE1631DGRHQEEERV1641KRDAEEKRRQ
1651-17001651EEGYYSRLEA1661ERRRQHEEAA1671RRLLEPEEPG1681LSRPPLPRDY1691EPPSLSSAPC
1701-17501701APPPPPQRNA1711SYLKTQVLSP1721DSLFTAKFVA1731YDEEEEDYGP1741AGPNSYSGSA
1751-18001751GTAVGAYDAP1761REAREKLTRS1771QDADLPGSSG1781APENLTFKER1791QRLFSQGQDV
1801-18201801SDKVKASRKL1811TELENELNTK
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 59 | - | - | - |
Deep-Palm: 0.28
|
|
| 296 | - | - | - |
Deep-Palm: 0.94
|
|
| 324 | - | - | - |
Deep-Palm: 0.87
|
|
| 450 | - | - | - |
Deep-Palm: 0.08
|
|
| 642 | - | - | - |
Deep-Palm: 0.45
|
|
| 733 | - | - | - |
Deep-Palm: 0.47
|
|
| 776 | - | - | - |
Deep-Palm: 0.91
|
|
| 811 | - | - | - |
Deep-Palm: 0.57
|
|
| 841 | - | - | - |
Deep-Palm: 0.97
|
|
| 870 | - | - | - |
Deep-Palm: 0.43
|
|
| 887 | - | - | - |
Deep-Palm: 0.54
|
|
| 942 | - | - | - |
Deep-Palm: 0.91
|
|
| 960 | - | - | - |
Deep-Palm: 0.87
|
|
| 965 | - | - | - |
Deep-Palm: 0.88
|
|
| 1206 | - | - | - |
Deep-Palm: 0.84
|
|
| 1300 | - | - | - |
Deep-Palm: 0.17
|
|
| 1700 | - | - | - |
Deep-Palm: 0.91
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Liver
Specificity: 0.667
2/2 (100.0%)
1
Brain
Specificity: 0.333
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.