Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9R0Q6 | Arpc1a | Actin-related protein 2/3 complex subunit … | Mus musculus (Mouse) | 370 aa |
Protein Details: Q9R0Q6 (Arpc1a)
Protein Information
| Accession | Q9R0Q6 |
|---|---|
| Protein Names | Actin-related protein 2/3 complex subunit 1A (SOP2-like protein) (Sid 329) |
| Gene Symbol | Arpc1a |
| Organism | Mus musculus (Mouse) |
| Length | 370 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 31311849 34200797 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSLHQFLLEP11ITCHAWNRDR21TQIALSPNNH31EVHIYKKNGS41QWTKAHELKE
51-10051HNGHITGIDW61APKSDRIVTC71GADRNAYVWS81QKDGIWKPTL91VILRINRAAT
101-150101FVKWSPLENK111FAVGSGARLI121SVCYFESEND131WWVSKHIKKP141IRSTVLSLDW
151-200151HPNNVLLAAG161SCDFKCRVFS171AYIKEVDEKP181ASTPWGSKMP191FGQLMSEFGG
201-250201SGTGGWVHGV211SFSASGNRLA221WVSHDSTVSV231ADASKSVQVS241TLRTEFLPLL
251-300251SVSFVSENSV261VAAGHDCCPM271LFNYDDRGCL281TFVSKLDVPK291QSIQRNMSAM
301-350301ERFRNMDKRA311TTEDRNTALE321TLHQNSITQV331SIYEVDKQDC341RKFCTTGIDG
351-370351AMTIWDFKTL361ESSIQGLRIM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 13 | SWISSPALM DBPTM CYSMODDB | WD40/YVTN repeat-like-containing domain superfamily Actin-related protein 2/3 complex subunit 1 |
Forebrain
(28680068)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.13
|
| 70 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.65
|
|
| 123 | - | - | - |
Deep-Palm: 0.60
|
|
| 162 | - |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.43
|
|
| 166 | - | - | - |
Deep-Palm: 0.73
|
|
| 267 | - | - | - |
Deep-Palm: 0.34
|
|
| 268 | - | - | - |
Deep-Palm: 0.24
|
|
| 279 | - |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.12
|
|
| 340 | - | - | - |
Deep-Palm: 0.06
|
|
| 344 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.07
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.444
4
Brain
Specificity: 0.100
4/4 (100.0%)
3
Liver
Specificity: 0.075
3/3 (100.0%)
2
Testis
Specificity: 0.050
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
31
Brain tissue (Mass)
Specificity: 0.775
31/56 (55.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.