Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9UG63 | ABCF2 | ATP-binding cassette sub-family F member … | Homo sapiens (Human) | 623 aa |
Protein Details: Q9UG63 (ABCF2)
Protein Information
| Accession | Q9UG63 |
|---|---|
| Protein Names | ATP-binding cassette sub-family F member 2 (Iron-inhibited ABC transporter 2) |
| Gene Symbol | ABCF2 |
| Organism | Homo sapiens (Human) |
| Length | 623 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 31382980 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MPSDLAKKKA11AKKKEAAKAR21QRPRKGHEEN31GDVVTEPQVA41EKNEANGRET
51-10051TEVDLLTKEL61EDFEMKKAAA71RAVTGVLASH81PNSTDVHIIN91LSLTFHGQEL
101-150101LSDTKLELNS111GRRYGLIGLN121GIGKSMLLSA131IGKREVPIPE141HIDIYHLTRE
151-200151MPPSDKTPLH161CVMEVDTERA171MLEKEAERLA181HEDAECEKLM191ELYERLEELD
201-250201ADKAEMRASR211ILHGLGFTPA221MQRKKLKDFS231GGWRMRVALA241RALFIRPFML
251-300251LLDEPTNHLD261LDACVWLEEE271LKTFKRILVL281VSHSQDFLNG291VCTNIIHMHN
301-350301KKLKYYTGNY311DQYVKTRLEL321EENQMKRFHW331EQDQIAHMKN341YIARFGHGSA
351-400351KLARQAQSKE361KTLQKMMASG371LTERVVSDKT381LSFYFPPCGK391IPPPVIMVQN
401-450401VSFKYTKDGP411CIYNNLEFGI421DLDTRVALVG431PNGAGKSTLL441KLLTGELLPT
451-500451DGMIRKHSHV461KIGRYHQHLQ471EQLDLDLSPL481EYMMKCYPEI491KEKEEMRKII
501-550501GRYGLTGKQQ511VSPIRNLSDG521QKCRVCLAWL531AWQNPHMLFL541DEPTNHLDIE
551-600551TIDALADAIN561EFEGGMMLVS571HDFRLIQQVA581QEIWVCEKQT591ITKWPGDILA
601-623601YKEHLKSKLV611DEEPQLTKRT621HNV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 161 | - | - | - |
Deep-Palm: 0.84
|
|
| 186 | - | - | - |
Deep-Palm: 0.98
|
|
| 264 | - | - | - |
Deep-Palm: 0.97
|
|
| 292 | - | - | - |
Deep-Palm: 0.68
|
|
| 388 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.71
|
|
| 411 | - | - | - |
GPS-Palm: 0.66
Deep-Palm: 0.38
|
|
| 486 | - | - | - |
Deep-Palm: 0.91
|
|
| 523 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.65
|
|
| 526 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.72
|
|
| 586 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.63
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.333
1
HAP1 cell
Specificity: 0.333
1/1 (100.0%)
1
U937 cell
Specificity: 0.333
1/1 (100.0%)
1
293T cell
Specificity: 0.333
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 161 | C → C | 0.001887 | SNP | Silent | UCEC |
| 195 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 195 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 223 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 284 | S → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 292 | C → S | 0.001764 | SNP | Missense Mutation | LUAD |