Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9WUM3 | Coro1b | Coronin-1B (Coronin-2) | Mus musculus (Mouse) | 484 aa |
Protein Details: Q9WUM3 (Coro1b)
Protein Information
| Accession | Q9WUM3 |
|---|---|
| Protein Names | Coronin-1B (Coronin-2) |
| Gene Symbol | Coro1b |
| Organism | Mus musculus (Mouse) |
| Length | 484 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSFRKVVRQS11KFRHVFGQPV21KNDQCYEDIR31VSRVTWDSTF41CAVNPKFLAV
51-10051IVEASGGGAF61MVLPLNKTGR71IDKAYPTVCG81HTGPVLDIDW91CPHNDEVIAS
101-150101GSEDCTVMVW111QIPENGLTSP121LTEPVVVLEG131HTKRVGIITW141HPTARNVLLS
151-200151AGCDNVVLIW161NVGTAEELYR171LDSLHPDLIY181NVSWNHNGSL191FCSACKDKSV
201-250201RIIDPRRGTL211VAEREKAHEG221ARPMRAIFLA231DGKVFTTGFS241RMSERQLALW
251-300251DPENLEEPMA261LQELDSSNGA271LLPFYDPDTS281VVYVCGKGDS291SIRYFEITDE
301-350301PPYIHFLNTF311TSKEPQRGMG321SMPKRGLEVS331KCEIARFYKL341HERKCEPIVM
351-400351TVPRKSDLFQ361DDLYPDTAGP371EAALEAEDWV381SGQDANPILI391SLREAYVPSK
401-450401QRDLKVSRRN411VLSDSRPASY421SRSGASTATA431VTDVPSGNLA441GAGEAGKLEE
451-484451VMQELRALRM461LVKEQGERIS471RLEEQLGRME481NGDT
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 25 | DBPTM SWISSPALM | WD40/YVTN repeat-like-containing domain superfamily Coronin Domain of unknown function DUF1899 Domain of unknown function (DUF1899) |
Liver
(28526873)
|
Liver
(37925639)
Brain
(35358180)
|
Deep-Palm: 0.21
|
| 41 | SWISSPALM DBPTM CYSMODDB | WD40/YVTN repeat-like-containing domain superfamily Coronin Domain of unknown function DUF1899 Domain of unknown function (DUF1899) |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.92
|
| 79 | - | - | - |
Deep-Palm: 0.29
|
|
| 91 | - | - | - |
Deep-Palm: 0.08
|
|
| 105 | - | - | - |
Deep-Palm: 0.08
|
|
| 153 | - | - | - |
Deep-Palm: 0.79
|
|
| 192 | - | - | - |
Deep-Palm: 0.14
|
|
| 195 | - | - | - |
Deep-Palm: 0.32
|
|
| 285 | - | - | - |
Deep-Palm: 0.74
|
|
| 332 | - | - | - |
Deep-Palm: 0.86
|
|
| 345 | SWISSPALM DBPTM CYSMODDB | Type of WD40 repeat |
Liver
(28526873)
| - |
Deep-Palm: 0.77
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.556
5
Liver
Specificity: 0.143
5/5 (100.0%)
2
Brain
Specificity: 0.057
2/2 (100.0%)
2
Testis
Specificity: 0.057
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.885
23
Brain tissue (Mass)
Specificity: 0.657
23/56 (41.1%)
3
Liver tissue (Mass)
Specificity: 0.086
3/8 (37.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.