Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9WUM4 | Coro1c | Coronin-1C (Coronin-3) | Mus musculus (Mouse) | 474 aa |
Protein Details: Q9WUM4 (Coro1c)
Protein Information
| Accession | Q9WUM4 |
|---|---|
| Protein Names | Coronin-1C (Coronin-3) |
| Gene Symbol | Coro1c |
| Organism | Mus musculus (Mouse) |
| Length | 474 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 31311849 34200797 34884899 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MRRVVRQSKF11RHVFGQAVKN21DQCYDDIRVS31RVTWDSSFCA41VNPRFVAIII
51-10051EASGGGAFLV61LPLHKTGRID71KSYPTVCGHT81GPVLDIDWCP91HNDQVIASGS
101-150101EDCTVMVWQI111PENGLTLSLT121EPVVILEGHS131KRVGIVAWHP141TARNVLLSAG
151-200151CDNAIIIWNV161GTGEALINLD171DMHSDMIYNV181SWSRNGSLIC191TASKDKKVRV
201-250201IDPRKQEIVA211EKEKAHEGAR221PMRAIFLADG231NVFTTGFSRM241SERQLALWNP
251-300251KNMQEPIALH261EMDTSNGVLL271PFYDPDTSII281YLCGKGDSSI291RYFEITDESP
301-350301YVHYLNTFSS311KEPQRGMGYM321PKRGLDVNKC331EIARFFKLHE341RKCEPIIMTV
351-400351PRKSDLFQDD361LYPDTAGPEA371ALEAEEWFEG381KNADPILISL391KHGYIPGKNR
401-450401DLKVVKKNIL411DSKPAANKKS421ELSCAPKKPT431DTASVQNEAK441LDEILKEIKS
451-474451IKETICSQDE461RISKLEQQLA471KMAA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 23 | WD40/YVTN repeat-like-containing domain superfamily Coronin Domain of unknown function DUF1899 Domain of unknown function (DUF1899) |
Brain
(31311849)
|
Liver
(37925639)
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.25
|
|
| 39 | SWISSPALM DBPTM CYSMODDB | WD40/YVTN repeat-like-containing domain superfamily Coronin Domain of unknown function DUF1899 Domain of unknown function (DUF1899) |
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.77
|
| 77 | - | - | - |
Deep-Palm: 0.18
|
|
| 89 | - | - | - |
Deep-Palm: 0.09
|
|
| 103 | - | - | - |
Deep-Palm: 0.12
|
|
| 151 | - | - | - |
Deep-Palm: 0.83
|
|
| 190 | THOC3 beta-propeller domain |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.90
Deep-Palm: 0.78
|
|
| 283 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.73
|
|
| 330 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.82
|
|
| 343 | SWISSPALM DBPTM CYSMODDB | Type of WD40 repeat |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.90
Deep-Palm: 0.72
|
| 424 | - |
brain
(39008777)
| - |
Deep-Palm: 0.94
|
|
| 456 | - |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.91
Deep-Palm: 0.88
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
5
Liver
Specificity: 0.139
5/5 (100.0%)
5
Brain
Specificity: 0.139
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
26
Brain tissue (Mass)
Specificity: 0.722
26/56 (46.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.