Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9WV80 | Snx1 | Sorting nexin-1 | Mus musculus (Mouse) | 522 aa |
Protein Details: Q9WV80 (Snx1)
Protein Information
| Accession | Q9WV80 |
|---|---|
| Protein Names | Sorting nexin-1 |
| Gene Symbol | Snx1 |
| Organism | Mus musculus (Mouse) |
| Length | 522 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35358180 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MASGGGGCSA11SERLPPPFPG21MDPESEGAAG31ASEPEAGDSD41TEGEDIFTGA
51-10051AAATKPQSPK61KTTSLFPIKN71GSKENGIHED81QDQEPQDLFA91DATVELSLDS
101-150101TQNNQKTMPG111KTLTSHSPQE121ATNSPKPQPS131YEELEEEEQE141DQFDLTVGIT
151-200151DPEKIGDGMN161AYVAYKVTTQ171TSLPMFRSRQ181FAVKRRFSDF191LGLYEKLSEK
201-250201HSQNGFIVPP211PPEKSLIGMT221KVKVGKEDSS231SAEFLEKRRA241ALERYLQRIV
251-300251NHPTMLQDPD261VREFLEKEEL271PRAVGTQALS281GAGLLKMFNK291ATDAVSKMTI
301-350301KMNESDIWFE311EKLQEVECEE321QRLRKLHAVV331ETLVNHRKEL341ALNTALFAKS
351-400351LAMLGSSEDN361TALSRALSQL371AEVEEKIEQL381HQEQANNDSF391LLAELLSDYI
401-450401RLLAIVRAAF411DQRMKTWQRW421QDAQATLQKK431RESEARLLWA441NKPDKLQQAK
451-500451DEITEWESRV461TQYERDFERI471STVVRKEVTR481FEKEKSKDFK491NHVMKYLETL
501-522501LHSQQQLAKY511WEAFLPEAKA521IS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 8 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.05
|
|
| 318 | SWISSPALM DBPTM CYSMODDB | Vps5 C terminal like |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.93
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Brain
Specificity: 0.062
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
15
Brain tissue (Mass)
Specificity: 0.938
15/56 (26.8%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.